blog

  • git game

    I was reminded of an interesting git game to learn git commands.  The url is https://github.com/hgarc0114/git-game.

    You clone the repository and then follow the clues in the README.md file.

  • 3.5 Years of Weekly Functional MRI Scanning

     
    PLOS
    • Published: October 30, 2015
    • DOI: 10.1371/journal.pone.0140134

    Resting-state functional MRI (rs-fMRI) permits study of the brain’s functional networks without requiring participants to perform tasks. Robust changes in such resting state networks (RSNs) have been observed in neurologic disorders, and rs-fMRI outcome measures are candidate biomarkers for monitoring clinical trials, including trials of extended therapeutic interventions for rehabilitation of patients with chronic conditions. In this study, we aim to present a unique longitudinal dataset reporting on a healthy adult subject scanned weekly over 3.5 years and identify rs-fMRI outcome measures appropriate for clinical trials. Accordingly, we assessed the reproducibility, and characterized the temporal structure of, rs-fMRI outcome measures derived using independent component analysis (ICA). Data was compared to a 21-person dataset acquired on the same scanner in order to confirm that the values of the single-subject RSN measures were within the expected range as assessed from the multi-participant dataset. Fourteen RSNs were identified, and the inter-session reproducibility of outcome measures—network spatial map, temporal signal fluctuation magnitude, and between-network connectivity (BNC)–was high, with executive RSNs showing the highest reproducibility. Analysis of the weekly outcome measures also showed that many rs-fMRI outcome measures had a significant linear trend, annual periodicity, and persistence. Such temporal structure was most prominent in spatial map similarity, and least prominent in BNC. High reproducibility supports the candidacy of rs-fMRI outcome measures as biomarkers, but the presence of significant temporal structure needs to be taken into account when such outcome measures are considered as biomarkers for rehabilitation-style therapeutic interventions in chronic conditions.

     

  • Squad lighting training

    Squad lighting training with the Friday night crew.

  • My Command Line Setup

    There are some tools that I have got used to or are more recent that I have found very useful in my coding/data/science life:

    TMux

    https://tmux.github.io/

    https://storage.googleapis.com/org-brechmos/conf-files/tmux.conf

     

    vimrc

    https://storage.googleapis.com/org-brechmos/conf-files/vimrc

    My standard editor.

     

    Oh-My-Zsh

    https://github.com/robbyrussell/oh-my-zsh

     

    Fuzzy Search

    https://github.com/junegunn/fzf